位置:首页 > 研究队伍  


田志喜


田志喜,博士,研究员,博士生导师 

  1997年获河北农业大学学士学位,2000获河北农业大学硕士学位,2007年获中国科学院遗传所博士学位。2007-2010年美国普渡大学博士后,2010-2011年普渡大学Research Geneticist。2012年入选中科院“百人计划”,终期评估优秀。2012年度获“国家优秀青年基金”资助,2015年度获“国家杰出青年基金”资助。2012年获得“中国科学青年之星金奖”,2016年获得“第十四届中国青年科技奖”,2017年获得“中青年科技创新领军人才”,2017年获得第三批国家“万人计划”领军人才。主要研究方向为大豆功能基因组研究,重点对影响大豆产量、品质等重要农艺性状的网络调控系统进行解析,并致力于培育高产优质的大豆新品种。

研究方向:大豆功能基因组研究
 
        大豆( Glycine  max ) 原产中国,由祖先野生大豆(Glycine  soja ) 长期定向选择、改良驯化而成。大豆是重要的粮食和油料作物,在我国已有5000多年的栽培历史。目前,中国已由大豆原产国和产豆大国转变为世界上最大的大豆进口国,大豆危机已经影响到我国的粮食安全。我们课题组利用关联分析、图位克隆和转基因手段,并结合比较基因组、生物信息学分析方法对影响大豆产量和品质的网络调控系统进行系统分析,揭示调控大豆器官发生、种子发育、植株形态建成以及品质形成的内在机制,为大豆分子育种奠定基础。
 
 
 
 
博士后和客座研究生招聘信息
 
        本实验室常年招生博士后和客座研究生,欢迎对大豆研究感兴趣、有志综合利用基因组学和功能组学解析重要农艺性状调控网络机理的优秀科研青年申请。
        欢迎各高校和研究单位同学报考本实验室博士。
Publications
(**Corresponding author; *Co-first author)
 
After 2012
 
1. Wang M*, Li W*, Fang C*, Xu F*, Liu Y*, Wang Z, Yang R, Zhang M, Liu S, Lu S, Lin T, Tang J, Wang Y, Wang H, Lin H, Zhu B, Chen M, Kong F, Liu B, Zeng D, Jackson S**, Chu C**, and Tian Z**. 2018. Parallel domestication selection of a dormancy gene in crops from multiple families. Nat Genet (in press)
 
2. Shen Y, Zhang J, Liu Y, Liu S, Liu Z, Duan Z, Wang Z, Zhu B, Guo YL, and Tian Z**. 2018. DNA methylation footprints during soybean domestication and improvement. Genome Biol (in press)
 
3. Shen Y, Liu J, Geng H, Zhang J, Liu Y, Zhang H, Xing S, Du J**, Ma S**, and Tian Z**. 2018. De novo assembly of a Chinese soybean genome. Sci China Life Sci 61: 871-884
 
4. Xu R*, Duan P, Yu H, Zhou Z, Zhang B, Wang R, Li J, Zhang G, Zhuang S, Lyu J, Li N, Chai T, Tian Z, Yao S, and Li Y**. 2018. Control of grain size and weight by the OsMKKK10-OsMKK4-OsMAPK6 signaling pathway in rice. Mol Plant 11: 860-873
 
5. Zhang D*, Sun L*, Li S*, Wang W*, Ding Y, Swarm S, Li L, Wang X, Tang X, Zhang Z, Tian Z, J. Brown P, Cai C, Nelson R, Ma J**. 2018. Elevation of soybean seed oil content through selection for seed coat shininess. Nat Plants 4: 30-35
 
6. Fang C*, Ma Y*, Wu S*, Liu Z, Wang Z, Yang R, Hu G, Zhou Z, Yu H, Zhang M, Pan Y, Zhou G, Ren H, Du W, Yan H, Wang Y, Han D, Shen Y, Liu S, Liu T, Zhang J, Qin H, Yuan J, Yuan X, Kong F, Liu B, Li J, Zhang Z**, Wang G**, Zhu B**, and Tian Z**. 2017. Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean. Genome Biol 18:161
 
7. Lu S*, Zhao X*, Hu Y, * Liu S*, Nan H, Li X, Fang C, Cao D, Shi X, Kong L, Su T, Zhang F, Li S, Wang Z, Yuan X,. Cober E, Weller J, Liu B, Hou X**, Tian Z**, and Kong F**. 2017. Natural variation at the soybean J locus improves adaptation to the tropics and enhances yield. Nat Genet 49:773-779
 
8. Zeng D*, Tian Z*, Rao Y, Dong G, Yang Y, Huang L, Leng Y, Xu J, Sun C, Zhang G, Hu J, Zhu L, Gao Z, Hu X, Guo L, Xiong G, Wang Y, Li J**, Qian Q**. 2017. Rational design of high-yield and superior-quality rice. Nat Plants 3:17031
 
9. Zou Y*, Hou X*, Wu Q, Chen J, Li Z, Han T, Niu X, Yang L, Xu Y, Zhang J, Zhang F, Tan D, Tian Z, Gu H and Guo Y**. 2017. Adaptation of Arabidopsis thaliana to the Yangtze River basin. Genome Biol 18:239
 
10. Chu S*, Wang J*, Zhu Y*, Liu S, Zhou X, Zhang H, Wang C, Yang W, Tian Z, Cheng H, Yu D**. 2017. A R2R3-type MYB transcription factor GmMYB29 regulates iso?avonoid biosynthesis in soybean. PLoS Genet 13: e1006770
 
11. Cao K*, Zhou Z*, Wang Q, Guo J, Zhao P, Zhu G, Fang W, Chen C, Wang X, Wang X, Tian Z**, and Wang L**. 2016. Genome-wide association study of 12 agronomic traits in peach. Nat Commun 7:13246
 
12. Li Q, Fang C, Duan Z, Liu Y, Qin H, Zhang J, Sun P, Li W, Wang G, and Tian Z**. 2016. Functional conservation and divergence of GmCHLI genes in polyploid soybean. Plant J 88: 584-596
 
13. Takeshima R, Hayashi T, Zhu J, Zhao C, Xu M, Yamaguchi N, Sayama T, Ishimoto M, Kong L, Shi X, Liu B, Tian Z, Yamada T, Kong F**, and Abe J**. 2016. A soybean quantitative trait locus that promotes flowering under long days is identified as FT5a, a FLOWERING LOCUS T ortholog. J Exp Bot 67: 5247-5258
 
14. Fang C, Ma Y, Yuan L, Wang Z, Yang Y, Zhou Z, Liu T, and Tian Z**. 2016. Chloroplasts DNA underwent independent selection from nuclear genes during soybean domestication and improvement. J Genet Genomics 43: 217-221
 
15. Liu T, Fang C, Ma Y, Shen Y, Li C, Li Q, Wang M, Liu S, Zhang J, Zhou Z, Yang R, Wang Z, and Tian Z**. 2016. Global investigation of the coevolution of MIRNA genes and microRNA targets during soybean domestication. Plant J 85: 396-409
 
 
17. Zhou Z*, Jiang Y*, Wang Z*, Gou Z*, Lyu J*, Li W*, Yu Y, Shu L, ZhaoY, Ma Y, Fang C, Shen Y, Liu T, Li C, Li Q, Wu M, Wang M, Wu Y, Dong Y, Wan W, Wang X, Ding Z, Gao Y, Xiang H, Zhu B, Lee SH, Wang W**, and Tian Z**. 2015. Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean. Nat Biotechnol 33: 408-414
 
18. Wang Z*, Zhou Z*, Liu Y*, Liu T, Li Q, Ji Y, Li C, Fang C, Wang M, Wu M, Shen Y, Tang T**, Ma J**, and Tian Z**. 2015. Functional evolution of phosphatidylethanolamine-binding proteins in soybean and Arabidopsis. Plant Cell 27: 323-336
 
19. Yang K*, Tian Z*, Chen C*, Luo L*, Zhao B, Wang Z, Yu L, Li Y, Sun Y, Li W, Chen Y, Li Y, Zhang Y, Ai D, Zhao J, Shang C, Ma Y, Wu B, Wang M, Gao L, Sun D, Zhang P, Guo F, Wang W, Li Y, Wang J, Varshney RK**, Wang J**, Ling HQ**,and Wan P**. 2015. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc Natl Acad Sci USA. 112: 13213-13218
 
20. Bai C*, Guo P*, Zhao Q, Lv Z, Zhang S, Gao F, Gao L, Wang Y, Tian Z, Wang J, Yang F, and Liu C**.2015. Protomer roles in chloroplast chaperonin assembly and function. Mol Plant 8: 1478-1492
 
21. Shen Y*, Zhou Z*, Wang Z, Li W, Fang C, Wu M, Ma Y, Liu T, Kong LA, Peng DL, and Tian Z**. 2014. Global dissection of alternative splicing in paleopolyploid soybean. Plant Cell 26: 996–1008
 
22. Fang C*, Li C*, Li W, Wang Z, Zhou Z, Shen Y, Wu M, Wu Y, Li G, Kong LA, Liu C, Jackson SA**, and Tian Z**. 2014. Concerted evolution of D1 and D2 to regulate chlorophyll degradation in soybean. Plant J 77, 700–712
 
23. Zhang F*, ShenY*, Sun S*, Guo J*, Li C, Wu C, Li Q, Nian H, Huang X**, Tian Z**, and Han T**. 2014. Genome-wide gene expression analysis in a dwarf soybean mutant. Plant Genet Resour 12: S70-S73
 
24. Ping J*, Liu Y*, Sun L*, Zhao M, Li Y, She M, Sui Y, Lin F, Liu X, Tang Z, Nguyen H, Tian Z, Qiu L, Nelson RL, Clemente TE, Specht JE, and Ma J**. 2014. Dt2 is a gain-of-function MADS-domain factor gene that specifies semideterminacy in soybean. Plant Cell 26:2831-2842
 
25. Zhou Z*, Wang Z*, Li W*, Fang C, Shen Y, Li C, Wu Y, and Tian Z**. 2013. Comprehensive analyses of microRNA genes evolution in paleopolyploid soybean genome. Plant J 76: 332-344
 
26. Fang C, Li W, Li G, Wang Z, Zhou Z, Ma Y, Shen Y, Li C, Wu Y, Zhu B, Yang W, and Tian Z**. 2013. Cloning of Ln gene through combined approach of map-based cloning and association study in soybean. J Genet Genomics 40: 93-96
 
27. Tian Z, Zhao M, She M, Du J, Cannon S, Liu X, Xu X, Qi X, Li M, Lam H, and Ma J**. 2012. Genome-wide characterization of non-reference transposons reveals evolutionary propensities of transposons in soybean. Plant Cell 24: 4422-4436
 
28. Du J, Tian Z, Sui Y, Zhao M, Song Q, Cannon SB, Cregan P, and Ma J**. 2012. Pericentromeric effects shape the patterns of divergence, retention, and expression of duplicated genes in the Paleopolyploid Soybean. Plant Cell 24:21-32
 
Before 2012
1. Tian Z, Yu Y, Lin F, Yu YS, SanMiguel JP, Wing AR, McCouch RS, Ma J**, and Jackson AS**. 2011. Exceptional lability of a genomic complex in rice and its close relatives. BMC Genomics.12:124
 
2. Yan C*, Tian Z*, Fang Y, Yang Y, Li J, Zeng S, Gu S, Xu C, Tang S, and Gu M**. 2011. Genetic dissection of starch paste viscosity characteristics in glutinous rice (Oryza sativa L.). Theor Appl Genet 122: 63-76
 
3. Gao Z, Zeng D, Cheng F, Tian Z, Guo L, Su Y, Yan M, Jiang H, Dong G, Huang Y, Han H, Li J, and Qian Q**. 2011. ALK, the key gene for gelatinization temperature, is a modifier gene for gel consistency in rice (Oryza sativa L.). J Integr Plant Biol.10:756
 
4. Tian Z*, Wang X*, Lee R, Li Y, Specht J, Nelson R, McClean P**, Qiu L**, and Ma J**. 2010. Artificial selection for determinate growth habit in soybean. Proc Natl Acad Sci USA 107: 8563-8568
 
5. Tian Z*, Yan C*, Qian Q, Yan S, Xie H, Wang F, Xu J, Liu G, Wang Y, Liu Q, Tang S, Li J**, Gu M**. 2010. Development of gene-tagged molecular markers for starch synthesis-related genes in rice. Chinese Sci Bull 55: 2591-2601
 
6. Du J, Tian Z, Schmutz J, Bowen NJ, Shoemaker RC, and Ma J**. 2010. Bifurcation and enhancement of autonomous-nonautonomous retrotransposon partnership through LTR swapping in soybean. Plant Cell 22: 48-61
 
7. Du J, Tian Z, Hans C, Laten H, Jackson S, Cannon S, Shoemaker R**, and Ma J**. 2010. Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: insights from genome-wide analysis and multi-specific comparison. Plant J 63: 584-598
 
8. Du J, Grant D, Tian Z, Nelson RT, Zhu L, Shoemaker RC, and Ma J. 2010. SoyTEdb: a comprehensive database of transposable elements in the soybean genome. BMC Genomics 11: 113
 
9. Schmutz J, Cannon SB, Schlueter J, Ma J, ... Du J, Tian Z, Zhu L.…, Rokhsar D, Shoemaker RC, and Jackson SA**. 2010. Genome sequence of the paleopolyploid soybean. Nature 463: 178-183
 
10. Tian Z*, Qian Q*, Liu Q*, Yan M, Liu X, Yan C, Liu G, Gao Z, Tang S, Zeng D, Wang Y, Yu J**, Gu M**, and Li J**. 2009. Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities. Proc Natl Acad Sci USA 106: 21760-21765.
 
11. Tian Z*, Rizzon C*, Du J, Zhu L, Bennetzen J L, Jackson SA**, Gaut B**, and Ma J**. 2009. Do genetic recombination and gene density shape the pattern of DNA elimination in rice LTR-retrotransposons? Genome Res 19:2221-2230.
 
12. Wu J*, Fujisawa M*, Tian Z*, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, and Matsumoto T**. 2009. Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure. Plant J 60:805-819